Table 2 Sources of isolates and GenBank accession numbers used in the phylogenetic analyses of Diaporthe. Newly sequenced material is indicated in bold type.
Species names* | Culture collection no. | Isolation sources | Host family | GenBank Accession Numbers | References | ||||
|---|---|---|---|---|---|---|---|---|---|
ITS | TEF1 | TUB | HIS | CAL | |||||
D. acaciigena | CBS 129521 (ex-type) | Acacia retinodes | Mimosaceae | KC343005 | KC343731 | KC343973 | KC343489 | KC343247 | Gomes et al. (2013) |
D. acerina | CBS 137.27 | Acer saccharum | Aceraceae | KC343006 | KC343732 | KC343974 | KC343490 | KC343248 | Gomes et al. (2013) |
D. acutispora | CGMCC 3.18285 = LC 6161 | Coffea sp., endophyte | Rubiaceae | KX986764 | KX999155 | KX999195 | KX999235 | KX999274 | This study |
LC 6142 | Camellia sasanqua, endophyte | Theaceae | KX986762 | KX999153 | KX999193 | KX999233 | KX999272 | This study | |
LC 6160 | Camellia sasanqua, endophyte | Theaceae | KX986800 | KX999192 | KX999232 | KX999271 | KX999293 | This study | |
D. alleghaniensis | CBS 495.72 (ex-type) | Betula alleghaniensis, branches | Betulaceae | KC343007 | KC343733 | KC343975 | KC343491 | KC343249 | Gomes et al. (2013) |
D. alnea | CBS 146.46 (ex-type) | Alnus sp. | Betulaceae | KC343008 | KC343734 | KC343976 | KC343492 | KC343250 | Gomes et al. (2013) |
CBS 159.47 | Alnus sp. | Betulaceae | KC343009 | KC343735 | KC343977 | KC343493 | KC343251 | Gomes et al. (2013) | |
D. ambigua | CBS 114015 | Pyrus communis | Rosaceae | KC343010 | KC343736 | KC343978 | KC343494 | KC343252 | Gomes et al. (2013) |
CBS 117176 | Aspalathus linearis, crown | Fabaceae | KC343011 | KC343737 | KC343979 | KC343495 | KC343253 | Gomes et al. (2013) | |
D. ampelina | CBS 114016 | Vitis vinifera | Vitaceae | AF230751 | AY745056 | JX275452 | - | AY745026 | Gomes et al. (2013) |
CBS 111888 | Vitis vinifera | Vitaceae | KC343016 | KC343742 | KC343984 | KC343500 | KC343258 | Gomes et al. (2013) | |
D. amygdali | CBS 126679 (ex-type) | Prunus dulcis | Rosaceae | KC343022 | KC343748 | KC343990 | KC343506 | KC343264 | Gomes et al. (2013) |
CBS 111811 | Vitis vinifera | Vitaceae | KC343019 | KC343745 | KC343987 | KC343503 | KC343261 | Gomes et al. (2013) | |
D. anacardii | CBS 720.97 (ex-epitype) | Anacardium occidentale | Anacardiaceae | KC343024 | KC343750 | KC343992 | KC343508 | KC343266 | Gomes et al. (2013) |
D. angelicae | CBS 111592 (ex-epitype) | Heracleum sphondylium | Apiaceae | KC343027 | KC343743 | KC343995 | KC343511 | KC343269 | Gomes et al. (2013) |
CBS 123215 | Foeniculum vulgare | Apiaceae | KC343028 | KC353754 | KC343996 | KC343512 | KC343270 | Gomes et al. (2013) | |
D. apiculata | LC 4152 | Camellia, leaf | Theaceae | KP267915 | KP267989 | KP293495 | KP293562 | - | Gao et al. (2016) |
LC 3418, (ex-type) | Camellia sinensis, leaf, endophyte | Theaceae | KP267896 | KP267970 | KP293476 | KP293550 | - | Gao et al. (2016) | |
D. arctii | CBS 136.25 | Arctium sp. | Arecaceae | KC343032 | KC343758 | KC344000 | KC343516 | KC343273 | Gomes et al. (2013) |
D. arecae | CBS 535.75 | Citrus sp., fruit | Rutaceae | KC343033 | KC343759 | KC344001 | KC343517 | KC343275 | Gomes et al. (2013) |
CBS 161.64 (ex-isotype) | Areca catechu, fruit | Arecaceae | KC343032 | KC343758 | KC344000 | KC343516 | KC343274 | Gomes et al. (2013) | |
D. arengae | CBS 114979 (ex-type) | Arenga engleri | Arecaceae | KC343034 | KC343760 | KC344002 | KC343518 | KC343276 | Gomes et al. (2013) |
D. asheiola | CBS 136967, CPC 16508, (ex-type) | Vaccinium ashei | Ericaceae | KJ160562 | KJ160594 | KJ160518 | - | KJ160542 | Lombard et al. (2014) |
CBS 136968, CPC 16511 | Vaccinium ashei | Ericaceae | KJ160563 | KJ160595 | KJ160519 | - | KJ160543 | Lombard et al. (2014) | |
D. aspalathi | CBS 117168 | Aspalathus linearis | Fabaceae | KC343035 | KC343761 | KC344003 | KC343519 | KC343277 | Gomes et al. (2013) |
CBS 117169, (ex-type) | Aspalathus linearis | Fabaceae | KC343036 | KC343762 | KC344004 | KC343520 | KC343278 | Gomes et al. (2013) | |
D. australafricana | CBS 111886 | Vitis vinifera | Vitaceae | KC343038 | KC343764 | KC344006 | KC343522 | KC343280 | Gomes et al. (2013) |
CBS 113487 | Vitis vinifera | Vitaceae | KC343039 | KC343765 | KC344007 | KC343523 | KC343281 | Gomes et al. (2013) | |
D. baccae | CBS 136971 | Vaccinium corymbosum | Ericaceae | KJ160564 | KJ160596 | - | - | - | Lombard et al. (2014) |
CBS 136972 (ex-type) | Vaccinium corymbosum | Ericaceae | KJ160565 | KJ160597 | - | - | - | Lombard et al. (2014) | |
D. batatas | CBS 122.21 | Ipomoea batatas | Convolvulaceae | KC343040 | KC343766 | KC344008 | KC343524 | KC343282 | Gomes et al. (2013) |
D. beckhausii | CBS 138.27 | Viburnum sp. | Caprifoliaceae | KC343041 | KC343767 | KC344009 | KC343525 | KC343283 | Gomes et al. (2013) |
D. beilharziae | BRIP 54792 (ex-type) | Indigofera australis | Papilionaceae | JX862529 | JX862535 | KF170921 | - | - | Thompson et al. (2015) |
D. benedicti | CFCC 50062 (ex-type) | Juglans mandshurica | Juglandaceae | KP208847 | KP208853 | KP208855 | KP208851 | KP208849 | Fan et al. (2015) |
CFCC 50063 | Juglans mandshurica | Juglandaceae | KP208848 | KP208854 | KP208856 | KP208852 | KP208850 | Fan et al. (2015) | |
D. betulae | CFCC 50469 (ex-type) | Betula platyphylla | Betulaceae | KT732950 | KT733016 | KT733020 | KT732999 | KT732997 | Du et al. (2016) |
CFCC 50470 | Betula platyphylla | Betulaceae | KT732951 | KT733017 | KT733021 | KT733000 | KT732998 | Du et al. (2016) | |
D. betulicola | CFCC 51128 (ex-type) | Betula albosinensis | Betulaceae | KX024653 | KX024655 | KX024657 | KX024661 | KX024659 | Du et al. (2016) |
CFCC 51129 | Betula albosinensis | Betulaceae | KX024654 | KX024656 | KX024658 | KX024662 | KX024660 | Du et al. (2016) | |
D. bicincta | DP0659, CBS 121004 | Juglans sp., dead wood | Juglandaceae | KC343134 | KC343860 | KC344102 | KC343618 | Udayanga et al. (2014a) | |
D. biconispora | ZJUD60, CGMCC3.17250 | Citrus sinensis | Rutaceae | KJ490595 | KJ490474 | KJ490416 | KJ490537 | - | Huang et al. (2015) |
ZJUD61, CGMCC 3.17251 | Fortunella margarita | Rutaceae | KJ490596 | KJ490475 | KJ490417 | KJ490538 | - | Huang et al. (2015) | |
ZJUD62, CGMCC 3.17252 | Citrus grandis | Rutaceae | KJ490597 | KJ490476 | KJ490418 | KJ490539 | - | Huang et al. (2015) | |
D. biguttulata | ZJUD47, CGMCC3.17248 (ex-type) | Citrus limon | Rutaceae | KJ490582 | KJ490461 | KJ490403 | KJ490524 | - | Huang et al. (2015) |
ZJUD48, CGMCC3.17249 | Citrus limon | Rutaceae | KJ490583 | KJ490462 | KJ490403 | KJ490525 | - | Huang et al. (2015) | |
D. biguttusis | CGMCC 3.17081 (ex-type) | Lithocarpus glabra | Fagaceae | KF576282 | KF576257 | KF576306 | - | - | Gao et al. (2015) |
D. brasiliensis | CBS 133183 (ex-type) | Aspidosperma tomentosus | Apocynaceae | KC343042 | KC343768 | KC344010 | KC343526 | KC343284 | Gomes et al., 2013 |
LGMF 926 | Aspidosperma tomentosus | Apocynaceae | KC343043 | KC343769 | KC344011 | KC343527 | KC343285 | Gomes et al., 2013 | |
D. canthii | CBS 132533 (ex-type) | Canthium inerme | Rubiaceae | JX069864 | KC843120 | KC843230 | - | KC843174 | Du et al. (2016) |
D. carpini | CBS 114437 | Carpinus betulus | Corylaceae | KC343044 | KC343770 | KC344012 | KC343528 | KC343286 | Gomes et al. (2013) |
D. caulivora | CBS 127268 (ex-neotype) | Glycine max | Fabaceae | KC343045 | KC343771 | KC344013 | KC343529 | KC343287 | Gomes et al. (2013) |
CBS 178.55 | Glycine soja | Fabaceae | KC343046 | KC343772 | KC344014 | KC343530 | KC343288 | Gomes et al. (2013) | |
D. celastrina | CBS 139.27 | Celastrus scandens | Celastraceae | KC343047 | KC343773 | KC344015 | KC343531 | - | Gomes et al. (2013) |
D. cf. heveae 1 | CBS 852.97 | Hevea brasiliensis | Euphorbiaceae | KC343116 | KC343842 | KC344084 | KC343600 | KC343358 | Gomes et al. (2013) |
D. cf. heveae 2 | CBS 681.84 | Hevea brasilliensis, leaf | Euphorbiaceae | KC343117 | KC343843 | KC344085 | KC343601 | KC343359 | Gomes et al. (2013) |
D. chamaeropis | CBS 454.81 | Chamaerops humilis, dead part of leaf | Arecaceae | KC343048 | KC343774 | KC344016 | KC343532 | KC343290 | Gomes et al. (2013) |
CBS 753.70 | Spartium junceum, dead branch | Fabaceae | KC343049 | KC343775 | KC344017 | KC343533 | KC343291 | Gomes et al. (2013) | |
D. charlesworthii | BRIP 4884m (ex-type) | Rapistrum rugostrum | Brassicaceae | KJ197288 | KJ197250 | KJ197268 | - | - | Thompson et al. (2015) |
D. cinerascens | CBS 719.96 | Ficus carica | Moraceae | KC343050 | KC343776 | KC344018 | KC343534 | KC343292 | Gomes et al. (2013) |
D. citri | CBS 230.52 | Citrus sinensis | Rutaceae | KC343052 | KC343778 | KC344020 | KC343536 | KC343294 | Gomes et al. (2013) |
CBS 199.39 | - | - | KC343051 | KC343777 | KC344019 | KC343535 | KC343293 | Gomes et al. (2013) | |
AR 3405 | Citrus sp. | Rutaceae | KC843311 | KC843071 | KC843187 | KJ420881 | - | Udayanga et al. (2014b) | |
D. citriasiana | ZJUD30 (ex-type) | Citrus unshiu, dead wood | Rutaceae | JQ954645 | JQ954663 | KC357459 | - | KC357491 | Huang et al. (2015) |
ZJUD 33 | Citrus paradise, stem-end rot fruit | Rutaceae | JQ954658 | JQ972716 | KC357460 | - | KC357493 | Huang et al. (2015) | |
D. citrichinensis | ZJUD 34 | Citrus sp. | Rutaceae | JQ954648 | JQ954666 | - | - | KC357494 | Huang et al. (2015) |
ZJUD 35 | Citrus unshiu, dead wood | Rutaceae | JQ954649 | JQ954667 | KC357461 | - | KC357495 | Huang et al. (2015) | |
ZJUD 36 | Citrus unshiu, dead wood | Rutaceae | KC357556 | KC357525 | KC357462 | - | KC357496 | Huang et al. (2015) | |
D. compacta | LC3083 (ex-type) | Camellia sinensis, leaf, endophyte | Theaceae | KP267854 | KP267928 | KP293434 | KP293508 | - | Gao et al. (2016) |
LC3084 | Camellia sinensis, leaf, endophyte | Theaceae | KP267855 | KP267929 | KP293435 | KP293509 | - | Gao et al. (2016) | |
D. convolvuli | CBS 124654 | Convolvulus arvensis | Convolvulaceae | KC343054 | KC343780 | KC344022 | KC343538 | KC343296 | Huang et al. (2015) |
D. crataegi | CBS 114435 | Crataegus oxyacantha | Rosaceae | KC343055 | KC343781 | KC344023 | KC343539 | KC343297 | Gomes et al. (2013) |
D. crotalariae | CBS 162.33 (ex-type) | Crotalaria spectabilis | Fabaceae | KC343056 | KC343782 | KC344024 | KC343540 | KC343298 | Gomes et al. (2013) |
D. cuppatae | CBS 117499 | Aspalathus linearis | Fabaceae | KC343057 | KC343783 | KC344025 | KC343541 | KC343299 | Gomes et al. (2013) |
D. cynaroidis | CBS 122676 | Protea cynaroides | Proteaceae | KC343058 | KC343784 | KC344026 | KC343542 | KC343300 | Gomes et al. (2013) |
D. cytosporella | AR 5149 | Citrus sinensis | Rutaceae | KC843309 | KC843118 | KC843222 | - | KC843143 | Udayanga et al. (2014b) |
D. decedens | CBS 114281 | Corylus avellana | Corylaceae | KC343060 | KC343786 | KC344028 | KC343544 | KC343302 | Gomes et al. (2013) |
CBS 109772 | Corylus avellana | Corylaceae | KC343059 | KC343785 | KC344027 | KC343543 | KC343301 | Gomes et al. (2013) | |
D. detrusa | CBS 109770 | Berberis vulgaris | Berberidaceae | KC343061 | KC343787 | KC344029 | KC343545 | KC343303 | Gomes et al. (2013) |
CBS 114652 | Berberis vulgaris | Berberidaceae | KC343062 | KC343788 | KC344030 | KC343546 | KC343304 | Gomes et al. (2013) | |
D. discoidspora | ZJUD 87, CGMCC3.17254 | Citrus sinensis | Rutaceae | KJ490622 | KJ490501 | KJ490443 | KJ490564 | - | Huang et al. (2015) |
ZJUD 89, CGMCC 3.17255 | Citrus unshiu | Rutaceae | KJ490624 | KJ490503 | KJ490445 | KJ490566 | - | Huang et al. (2015) | |
D. elaeagni | CBS 504.72 | Elaeagnus sp., twig | Elaeagnaceae | KC343064 | KC343790 | KC344032 | KC343548 | KC343306 | Gomes et al. (2013) |
D. elaeagni-glabrae | CGMCC 3.18287 = LC 4802 | Elaeagnus glabra, pathogen | Elaeagnaceae | KX986779 | KX999171 | KX999212 | KX999251 | KX999281 | This study |
LC 4806 | Elaeagnus glabra, pathogen | Elaeagnaceae | KX986780 | KX999172 | KX999213 | KX999252 | KX999282 | This study | |
D. ellipicola | CGMCC3.17084 (ex-type) | Lithocarpus glabra, diseased leaves | Fagaceae | KF576270 | KF576245 | KF576291 | - | - | Gao et al. (2015) |
D. endophytica | CBS 133811 (ex-type) | Schinus terebinthifolius | Anacardiaceae | KC343065 | KC343791 | KC344033 | KC343549 | KC343307 | Gomes et al. (2013) |
LGMF 911 | Schinus terebinthifolius | Anacardiaceae | KC343066 | KC343792 | KC344034 | KC343550 | KC343308 | Gomes et al. (2013) | |
D. eres | AR5193, CBS 13859 (ex-epitype) | Ulmus laevis | Ulmaceae | KJ210529 | KJ210550 | KJ420799 | KJ420850 | - | Udayanga et al. (2014a) |
CBS 113470 | Castanea sativa | Fagaceae | KC343146 | KC343872 | KC344114 | KC343630 | - | Udayanga et al. (2014a) | |
D. eugeniae | CBS 444.82 | Eugenia aromatica, leaf | Mrytaceae | KC343098 | KC343824 | KC344066 | KC343582 | KC343340 | Gomes et al. (2013) |
D. fibrosa | CBS 109751 | Rhamnus cathartica | Rhamnaceae | KC343099 | KC343825 | KC344067 | KC343583 | KC343341 | Gomes et al. (2013) |
CBS 113830 | Rhamnus cathartica | Rhamnaceae | KC343100 | KC343826 | KC344068 | KC343584 | KC343342 | Gomes et al. (2013) | |
D. foeniculina | CBS 116957 | Pyrus pyrifolia | Rosaceae | KC343103 | KC343829 | KC344071 | KC343587 | KC343345 | Gomes et al. (2013) |
CBS 187.27 (ex-type of P. theicola) | Camellia sinensis, leaves and branches | Theaceae | KC343107 | KC343833 | KC344075 | KC343591 | KC343349 | Gomes et al. (2013) | |
CBS 123208 | Foeniculum vulgare | Apiaceae | KC343104 | KC343830 | KC344072 | KC343588 | KC343346 | Gomes et al. (2013) | |
D. fraxini-angustifolia | BRIP 54781 (ex-epitype) | Fraxinus-angustifolia subsp. oxycapa | Oleaceae | JX862528 | JX852534 | KF170920 | - | - | Tan et al. (2013) |
D. ganjae | CBS 180.91 (ex-type) | Cannabis sativa, dead leaf | Cannabaceae | KC343112 | KC343838 | KC344080 | KC343596 | KC343354 | Gomes et al. (2013) |
D. gardeniae | CBS 288.56 | Gardenia florida, stem | Rubiaceae | KC343113 | KC343839 | KC344081 | KC343597 | KC343355 | Gomes et al. (2013) |
D. goulteri | BRIP 55657a (ex-type) | Helianthus annuus | Asteraceae | KJ197289 | KJ197252 | KJ197270 | - | - | Thompson et al. (2015) |
D. gulyae | BRIP 54025 (ex-type) | Helianthus annuus | Asteraceae | JF431299 | JN645803 | KJ197271 | - | - | Thompson et al. (2015) |
D. helianthi | CBS 344.94 | Helianthus annuus | Asteraceae | KC343114 | KC343840 | KC344082 | KC343598 | KC343356 | Gomes et al. (2013) |
CBS 592.81 (ex-type) | Helianthus annuus | Asteraceae | KC343115 | KC343841 | KC344083 | KC343599 | KC343357 | Gomes et al. (2013) | |
D. helicis | AR 5211 | Hedera helix | Araliaceae | KJ210538 | KJ210559 | KJ420828 | KJ420875 | KJ435043 | Udayanga et al. (2014a) |
D. hickoriae | CBS 145.26 (ex-epitype) | Carya glabra | Juglandaceae | KC343118 | KC343844 | KC344086 | KC343602 | KC343360 | Gomes et al. (2013) |
D. hongkongensis | CBS 115448 (ex-type) | Dichroa febrifuga, fruit | Hydrangeaceae | KC343119 | KC343845 | KC344087 | KC343603 | KC343361 | Gomes et al. (2013) |
D. hordei | CBS 481.92 | Hordeum vulgare | Poaceae | KC343120 | KC343846 | KC344088 | KC343604 | KC343362 | Gomes et al. (2013) |
D. impulsa | CBS 114434 | Sorbus aucuparia | Rosaceae | KC343121 | KC343847 | KC344089 | KC343605 | KC343363 | Gomes et al. (2013) |
CBS 141.27 | Sorbus americana | Rosaceae | KC343122 | KC343848 | KC344090 | KC343606 | KC343364 | Gomes et al. (2013) | |
D. incompleta | CGMCC 3.18288 = LC 6754 | Camellia sinensis, pathogen | Theaceae | KX986794 | KX999186 | KX999226 | KX999265 | KX999289 | This study |
LC 6706 | Camellia sinensis, pathogen | Theaceae | KX986793 | KX999185 | KX999264 | KX999288 | This study | ||
D. inconspicua | CBS 133813(ex-type) | Maytenus ilicifolia, endophytic in petiole | Celastraceae | KC343123 | KC343849 | KC344091 | KC343607 | KC343365 | Gomes et al. (2013) |
D. infecunda | CBS 133812 (ex-type) | Schinus terebinthifolius | Anacardiaceae | KC343126 | KC343852 | KC344094 | KC343610 | KC343368 | Gomes et al. (2013) |
LGMF 908 | Schinus terebinthifolius | Anacardiaceae | KC343127 | KC343853 | KC344095 | KC343611 | KC343369 | Gomes et al. (2013) | |
D. kongii | BRIP 54031 (ex-type) | Helianthus annuus | Asteraceae | JF431301 | JN645797 | KJ197272 | - | - | Thompson et al. (2011) |
D. lichicola | BRIP 54900 (ex-type) | Litchi chinensis | Sapindaceae | JX862533 | JX862539 | KF170925 | - | - | Tan et al. (2013) |
D. longicicola | CGMCC 3.17089 (ex-type) | Lithocarpus glabra | Fagaceae | KF576267 | KF576242 | KF576291 | - | - | Gao et al. (2015) |
D. longicolla | FAU 599 | Glycine max | Fabaceae | KJ590728 | KJ590767 | KJ610883 | KJ659188 | - | Udayanga et al. (2015) |
D. longispora | CBS 194.36 (ex-type) | Ribes sp. | Grossulariaceae | KC343135 | KC343861 | KC344103 | KC343619 | KC343377 | Gomes et al. (2013) |
D. lusitanicae | CBS 123212 (ex-type) | Foeniculum vulgare | Apiaceae | KC343136 | KC343862 | KC344104 | KC343620 | - | Gomes et al. (2013) |
CBS 123213 | Foeniculum vulgare | Apiaceae | KC343137 | KC343863 | KC344105 | KC343621 | KC343379 | Gomes et al. (2013) | |
D. macintoshii | BRIP 55064a | Rapistrum rugostrum | Brassicaceae | KJ197290 | KJ197251 | KJ197269 | - | - | Thompson et al. (2015) |
D. mahothocarpus | CGMCC 3.15181 | Lithocarpus glabra | Fagaceae | KC153096 | KC153087 | - | - | - | Gao et al. (2014) |
D. manihotia | CBS 505.76 | Manihot utilissima, leaves | Euphorbiaceae | KC343138 | KC343864 | KC344106 | KC343622 | KC343380 | Gomes et al. (2013) |
D. maritima | NB 382-2E | Picea rubens needle | Pinaceae | KU552026 | KU552024 | KU574614 | - | - | Tanney et al. (2016) |
NB 463-3A | Picea rubens needle | Pinaceae | KU552027 | KU552022 | KU574616 | - | - | Tanney et al. (2016) | |
NB365-71I (ex-type) | Picea rubens needle | Pinaceae | KU552025 | KU552023 | KU574615 | - | - | Tanney et al. (2016) | |
D. masirevicii | BRIP 57330 | Chrysanthemoides monilifera subsp. rotundata | Rosaceae | KJ197275 | KJ197237 | KJ197255 | - | - | Huang et al. (2015) |
BRIP 57892a (ex-type) | Helianthus annuus | Asteraceae | KJ197277 | KJ197239 | KJ197257 | - | - | Huang et al. (2015) | |
D. mayteni | CBS 133185 (ex-type) | Maytenus ilicicolia | Celastraceae | KC343139 | KC343865 | KC344107 | KC343623 | KC343381 | Gomes et al. (2013) |
D. megalospora | CBS 143.27 | Sambucus canadensis | Caprifoliaceae | KC343140 | KC343866 | KC344108 | KC343624 | KC343382 | Gomes et al. (2013) |
D. melonis | CBS 435.87 | Glycine soja | Fabaceae | KC343141 | KC343867 | KC344109 | KC343625 | KC343383 | Gomes et al. (2013) |
CBS 507.78 (ex-isotype) | Cucumis melo | Cucurbitaceae | KC343142 | KC343868 | KC344110 | KC343626 | KC343384 | Gomes et al. (2013) | |
D. middletonii | BRIP 57329 | Chrysanthemoides monilifera subsp. rotundata | Rosaceae | KJ197285 | KJ197247 | KJ197265 | - | - | Thompson et al. (2015) |
BRIP 54884e (ex-type) | Rapistrum rugostrum | Brassicaceae | KJ197286 | KJ197248 | KJ197266 | - | - | Thompson et al. (2015) | |
D. miriciae | BRIP 55662c | Glycine max | Fabaceae | KJ197283 | KJ197245 | KJ197263 | - | - | Thompson et al. (2015) |
BRIP 54736j (ex-type) | Helianthus annuus | Asteraceae | KJ197282 | KJ197244 | KJ197262 | - | - | Thompson et al. (2015) | |
BRIP 56918a | Vigna radiata | Papilionaceae | KJ197284 | KJ197246 | KJ197264 | - | - | Thompson et al. (2015) | |
D. multigutullata | ZJUD 98 | Citrus grandis | Rosaceae | KJ490633 | KJ490512 | KJ490454 | KJ490575 | - | Huang et al. (2015) |
D. musigena | CBS 129519; CPC 17026 (ex-type) | Musa sp., leaves | Musaceae | KC343143 | KC343869 | KC344111 | KC343627 | KC343385 | Gomes et al. (2013) |
D. neilliae | CBS 144.27 | Spiraea sp. | Rosaceae | KC343144 | KC343870 | KC344112 | KC343628 | KC343386 | Udayanga et al. (2014a) |
D. neoarctii | CBS 109490 (ex-type) | Ambrosia trifida | Asteraceae | KC343145 | KC343871 | KC344113 | KC343629 | KC343387 | Gomes et al. (2013) |
D. neoraonikayaporum | MFLUCC 14-1136 | Tectona grandis | Verbenaceae | KU712449 | KU749369 | KU743988 | - | KU749356 | Doilom et al. (2017) |
MFLUCC 14-1137 | Tectona grandis | Verbenaceae | KU712450 | KU749370 | KU743989 | - | KU749357 | Doilom et al. (2017) | |
MFLUCC 14-1133 | Tectona grandis | Verbenaceae | KU712448 | KU749368 | KU743987 | - | KU749355 | Doilom et al. (2017) | |
D. nobilis | CBS 200.39 | Laurus nobilis, stem | Lauraceae | KC343151 | KC343877 | KC344119 | KC343635 | KC343393 | Gomes et al. (2013) |
D. nomurai | CBS 157.29 | Morus sp. | Moraceae | KC343154 | KC343880 | KC344122 | KC343638 | KC343396 | Gomes et al. (2013) |
D. nothofagi | BRIP 54801 (ex-type) | Nothofagus cunninghamii | Fagaceae | JX862530 | JX862536 | KF170922 | - | - | Tan et al. (2013) |
D. novem | CBS 127269 | Glycine max | Fabaceae | KC343155 | KC343881 | KC344123 | KC343639 | KC343397 | Gomes et al. (2013) |
CBS 127270 (ex-type) | Glycine max | Fabaceae | KC343156 | KC343882 | KC344124 | KC343640 | KC343398 | Gomes et al. (2013) | |
D. oncostoma | CBS 100454 | Robinia pseudoacacia, leaf spot | Fabaceae | KC343160 | KC343886 | KC344128 | KC343644 | KC343402 | Gomes et al. (2013) |
CBS 109741 | Robinia pseudoacacia | Fabaceae | KC343161 | KC343887 | KC344129 | KC343645 | KC343403 | Gomes et al. (2013) | |
D. oraccinii | LC 3166 (ex-type) | Camellia sinensis, leaf, endophyte | Theaceae | KP267863 | KP267937 | KP293443 | KP293517 | - | Gao et al. (2016) |
LC 3296 | Camellia sinensis, leaf, endophyte | Theaceae | KP267884 | KP267958 | KP293464 | KP293538 | - | Gao et al. (2016) | |
D. ovalispora | ZJUD93, CGMCC3.17256 | Citrus limon | Rosaceae | KJ490628 | KJ490507 | KJ490449 | KJ490570 | - | Huang et al. (2015)⩽ |
D. oxe | CBS 133186 (ex-type) | Maytenus ilicifolia | Celastraceae | KC343164 | KC343890 | KC344132 | KC343648 | KC343406 | Gomes et al. (2013) |
CBS 133187 | Maytenus ilicifolia | Celastraceae | KC343165 | KC343891 | KC344133 | KC343649 | KC343407 | Gomes et al. (2013) | |
D. padi var. padi | CBS 114200 | Prunus padus | Rosaceae | KC343169 | KC343895 | KC344137 | KC343653 | KC343411 | Gomes et al. (2013) |
CBS 114649 | Alnus glutinosa | Betulaceae | KC343170 | KC343896 | KC344138 | KC343654 | KC343412 | Gomes et al. (2013) | |
D. paranensis | CBS 133184 (ex-type) | Maytenus ilicifolia | Celastraceae | KC343171 | KC343897 | Kc344139 | KC343655 | KC343413 | Gomes et al. (2013) |
D. pascoei | BRIP 54847 (ex-type) | Persea americana | Lauraceae | JX862532 | JX862538 | KF170924 | - | - | Tan et al. (2013) |
D. penetriteum | LC 3353 | Camellia sinensis, leaf | Theaceae | KP714505 | KP714517 | KP714529 | KP714493 | - | Gao et al. (2016) |
LC 3394 | Camellia sinensis, leaf | Theaceae | KP267893 | KP267967 | KP293473 | KP293547 | - | Gao et al. (2016) | |
D. perjuncta | CBS 109745 (ex-type) | Ulmus glabra | Ulmaceae | KC343172 | KC343898 | KC344140 | KC343656 | KC343414 | Gomes et al. (2013) |
D. perniciosa | CBS 124030 | Malus pumila, bark | Rosaceae | KC343149 | KC343875 | KC344117 | KC343633 | KC343391 | Gomes et al. (2013) |
D. perseae | CBS 151.73 | Perseae gratissima, young fruit | Lauraceae | KC343173 | KC343899 | KC344141 | KC343657 | KC343415 | Gomes et al. (2013) |
D. phaseolorum | AR 4203, CBS 139281 | Phaseolus vulgaris | Fabaceae | KJ590738 | KJ590739 | KJ610893 | KJ659220 | - | Huang et al. (2015) |
CBS 116019 | Caperonia palustris | Euphorbiaceae | KC343175 | KC343901 | KC344143 | KC343659 | KC343417 | Gomes et al. (2013) | |
CBS 116020 | Aster exilis | Asteraceae | KC343176 | KC343902 | KC344144 | KC343660 | KC343418 | Gomes et al. (2013) | |
D. podocarpi-macrophylli | CGMCC 3.18281 = LC 6155 | Podocarpus macrophyllus, endophyte | Podocarpaceae | KX986774 | KX999167 | KX999207 | KX999246 | KX999278 | This study |
LC 6144 | Podocarpus macrophyllus, endophyte | Podocarpaceae | KX986773 | KX999166 | KX999206 | KX999245 | - | This study | |
LC 6194 | Podocarpus macrophyllus, endophyte | Podocarpaceae | KX986765 | KX999156 | KX999196 | KX999236 | KX999275 | This study | |
LC 6197 | Podocarpus macrophyllus, endophyte | Podocarpaceae | KX986777 | KX999170 | KX999210 | KX999249 | KX999279 | This study | |
LC 6200 | Podocarpus macrophyllus, endophyte | Podocarpaceae | KX986769 | KX999161 | KX999201 | KX999240 | KX999276 | This study | |
LC 6229 | Olea europaea, endophytes | Oleaceae | KX986771 | KX999164 | KX999204 | KX999243 | KX999277 | This study | |
D. pseudomangiferae | CBS 101339 (ex-type) | Mangifera indica | Anacardiaceae | KC343181 | KC343907 | KC344149 | KC343665 | KC343423 | Gomes et al. (2013) |
CBS 388.89 | Mangifera indica, peel of fruit | Anacardiaceae | KC343182 | KC343908 | KC344150 | KC343666 | KC343424 | Gomes et al. (2013) | |
D. pseudophoenicicola | CBS 462.69 (ex-type) | Phoenix dactylifera, dead tops of green leaves | Anacardiaceae | KC343184 | KC343910 | KC344152 | KC343668 | KC343426 | Gomes et al. (2013) |
CBS 176.77 | Mangifera indica, showing dieback | Anacardiaceae | KC343183 | KC343909 | KC344151 | KC343667 | KC343425 | Gomes et al. (2013) | |
D. pterocarpi | MFLUCC 10-0571 | Pterocarous indicus | Papilionaceae | JQ619899 | JX275416 | JX275460 | - | JX197451 | Udayanga et al. (2012) |
MFLUCC 10-0575 | Pterocarous indicus | Papilionaceae | JQ619901 | JX275418 | JX275462 | - | JX197453 | Udayanga et al. (2012) | |
D. pterocarpicola | MFLUCC 10-0580a (ex-type) | Piterocarpus indicus | Papilionaceae | JQ619887 | JX275403 | JX275441 | - | JX197433 | Udayanga et al. (2012) |
MFLUCC 10-0580b | Piterocarpus indicus | Papilionaceae | JQ619888 | JX275404 | JX275442 | - | JX197434 | Udayanga et al. (2012) | |
D. pulla | CBS 338.89 | Hedera helix | Araliaceae | KC343152 | KC343878 | KC344120 | KC343636 | - | Udayanga et al. (2014a) |
D. pustulata | CBS 109742 | Acer pseudoplatanus | Aceraceae | KC343185 | KC343911 | KC344153 | KC343669 | KC343427 | Gomes et al. (2013) |
CBS 109760 | Acer pseudoplatanus | Aceraceae | KC343186 | KC343912 | KC344154 | KC343670 | KC343428 | Gomes et al. (2013) | |
D. raonikayaporum | CBS 133182 (ex-type) | Spondias mombin | Anacardiaceae | KC343188 | KC343914 | KC344156 | KC343672 | KC343430 | Gomes et al. (2013) |
D. rhoina | CBS 146.27 | Rhus toxicodendron | Anacardiaceae | KC343189 | KC343915 | KC344157 | KC343673 | KC343431 | Gomes et al. (2013) |
D. rudis | CBS 113201 (ex-type) | Vitis vinifera | Vitaceae | KC343234 | KC343960 | KC344202 | KC343718 | KC343476 | Machingambi et al. (2015) |
CBS 114011 | Vitis Vinifera | Vitaceae | KC343235 | KC343961 | KC344203 | KC343718 | KC343477 | Machingambi et al. (2015) | |
D. saccarata | CBS 116311 (ex-type) | Protea repens, cankers | Proteceae | KC343190 | KC343916 | KC344158 | KC343674 | KC343432 | Gomes et al. (2013) |
D. sackstonii | BRIP 54669b (ex-type) | Helianthus annuus | Asteraceae | KJ197287 | KJ197249 | KJ197267 | - | - | Gomes et al. (2013) |
D. salicicola | BRIP 54825 (ex-type) | Salix purpurea | Salicaceae | JX862531 | JX862537 | KF170923 | - | - | Gomes et al. (2013) |
D. schini | LGMF 910, CPC 20286 | Schinus terebinthifolius, endophytic in leaf | Anacardiaceae | KC343192 | KC343918 | KC344160 | KC343676 | KC343434 | Thompson et al. (2015) |
CBS 133181 (ex-type) | Schinus terebinthifolius, endophytic in leaf | Anacardiaceae | KC343191 | KC343917 | KC344159 | KC343675 | KC343433 | Tan et al. (2013) | |
D. sclerotioides | CBS 296.67 (ex-type) | Cucumis sativus | Cucurbitaceae | KC343193 | KC343919 | KC344161 | KC343677 | KC343435 | Gomes et al. (2013) |
CBS 710.76 | Cucumis sativus | Cucurbitaceae | KC343194 | KC343920 | KC344162 | KC343678 | KC343436 | Gomes et al. (2013) | |
D. scobina | CBS 251.38 | Fraxinus Excelsior, living and dead twig | Oleaceae | KC343195 | KC343921 | KC344163 | KC343679 | KC343437 | Gomes et al. (2013) |
D. serafiniae | BRIP 55665a (ex-type) | Helianthus annuus | Asteraceae | KJ197274 | KJ197236 | KJ197254 | - | - | Gomes et al. (2013) |
BRIP 54136 | Lupinus albus “Rosetta” | Fabaceae | KJ197273 | KJ197235 | KJ197253 | - | - | Gomes et al. (2013) | |
D. siamensis | MFLUCC 10_0573a | Dasymaschalon sp. | Annonaceae | JQ619879 | JX275393 | JX275429 | - | - | Thompson et al. (2015) |
MFLUCC 10_0573b | Dasymaschalon sp. | Annonaceae | JQ619880 | JX275395 | JX275430 | - | - | Thompson et al. (2015) | |
D. sojae | CBS 100.87 | Glycine soja | Fabaceae | KC343196 | KC343922 | KC344164 | KC343680 | KC343438 | Udayanga et al. (2012) |
CBS 116017 | Euphorbia nutans | Euphorbiaceae | KC343197 | KC343923 | KC344165 | KC343681 | KC343439 | Udayanga et al. (2012) | |
FAU 635 | Glycine max | Fabaceae | KJ590719 | KJ590762 | KJ610875 | KJ659208 | - | Gomes et al. (2013) | |
D. sterilis | CBS 136969 (ex-type) | Vaccinium corymbosum | Ericaceae | KJ160579 | KJ160611 | KJ160528 | - | KJ160548 | Gomes et al. (2013) |
CBS 136970 | Vaccinium corymbosum | Ericaceae | KJ160580 | KJ160612 | KJ160529 | - | KJ160549 | Huang et al. (2015) | |
D. stewartii | CBS 193.36 | - | - | FJ889448 | GQ250324 | - | - | - | Lombard et al. (2014) |
D. stictica | CBS 370.54 | Buxus sampervirens, dead twig | Buxaceae | KC343212 | KC343938 | KC344180 | KC343696 | KC343454 | Lombard et al. (2014) |
D. subclavata | ZJUD83, CGMCC 3.17253 | Citrus grandis cv. Shatianyou | Rosaceae | KJ490618 | KJ490497 | KJ490439 | KJ490560 | - | Udayanga et al. (2011) |
ZJUD95, CGMCC 3.17257 | Citrus unshiu | Rosaceae | KJ490630 | KJ490509 | KJ490451 | KJ490572 | - | Gomes et al. (2013) | |
D. subordinaria | CBS 101711 | Plantago lanceolata | Plantaginaceae | KC343213 | KC343939 | KC344181 | KC343697 | KC343455 | Huang et al. (2015) |
CBS 464.90 | Plantago lanceolata | Plantaginaceae | Kc343214 | KC343940 | KC344182 | KC343698 | KC343456 | Huang et al. (2015) | |
D. tecomae | CBS 100547 | Tabebuia sp. | Bignoniaceae | KC343215 | KC343941 | KC344183 | KC343699 | KC343457 | Gomes et al. (2013) |
D. tectonae | MFLUCC 12-0777 | Tectona grandis | Verbenaceae | KU712430 | KU749359 | KU743977 | - | KU749345 | Gomes et al. (2013) |
MFLUCC 14-1138 | Tectona grandis | Verbenaceae | KU712437 | KU749365 | KU743984 | - | KU749352 | Gomes et al. (2013) | |
D. tectonendo-phytica | MFLUCC 13-0471 | Tectona grandis | Verbenaceae | KU712439 | KU749367 | KU743986 | - | KU749354 | Doilom et al. (2017) |
D. tectonigena | MFLUCC 12-0767 | Tectona grandis | Verbenaceae | KU712429 | KU749371 | KU743976 | - | KU749358 | Doilom et al. (2017) |
D. terebinthifolii | CBS 133180 | Schinus terebinthifolius | Anacardiaceae | KC343216 | KC343942 | KC344184 | KC343700 | KC343458 | Doilom et al. (2017) |
LGMF 907 | Schinus terebinthifolius | Anacardiaceae | KC343217 | KC343943 | KC344185 | KC343701 | KC343459 | Doilom et al. (2017) | |
D. thunbergii | MFLUCC 10_0756a | Thunbergia laurifolia | Acanthaceae | JQ619893 | JX275409 | JX275449 | - | JX197440 | Doilom et al. (2017) |
MFLUCC 10_0756b | Thunbergia laurifolia | Acanthaceae | JQ619894 | JX275410 | JX275450 | - | JX197441 | Doilom et al. (2017) | |
D. toxica | CBS 534.93 (ex-type) | Lupinus angustifolius, stem | Fabaceae | KC343220 | KC343946 | KC344188 | KC343704 | KC343462 | Udayanga et al. (2012) |
CBS 535.93 | Lupinus sp. | Fabaceae | KC343221 | KC343947 | KC344189 | KC343705 | KC343463 | Udayanga et al. (2012) | |
D. tulliensis | BRIP 62248a | Theobroma cacao | Sterculiaceae | KR936130 | KR936133 | KR936132 | - | - | Gomes et al. (2013) |
D. ueckerae | FAU 656 | Cucumis melo | Cucurbitaceae | KJ590726 | KJ590747 | KJ610881 | KJ659215 | - | Gomes et al. (2013) |
FAU 658 | Cucumis melo | Cucurbitaceae | KJ590725 | KJ590746 | KJ610880 | KJ659214 | - | Crous et al. (2015) | |
D. undulata | CGMCC 3.18293 = LC 6624 | Unknown host, pathogen | - | KX986798 | KX999190 | KX999230 | KX999269 | Huang et al. (2015) | |
LC 8110 | Unknown host, pathogen | - | KY491545 | KY491555 | KY491565 | - | - | Huang et al. (2015) | |
LC 8111 | Unknown host, pathogen | - | KY491546 | KY491556 | KY491566 | - | - | This study | |
D. unshiuensis | ZJUD51,CGMCC3.17568 | Fortunella margarita | Rutaceae | KJ490586 | KJ490465 | KJ490407 | KJ490528 | - | This study |
ZJUD52, CGMCC3.17569 | Citrus unshiu | Rosaceae | KJ490587 | KJ490466 | KJ490408 | KJ490529 | - | This study | |
D. vaccinii | CBS 160.32 (ex-type) | Oxycoccus macrocarpos | Ericaceae | KC343228 | KC343954 | KC344196 | KC343712 | KC343470 | Huang et al. (2015) |
CBS 118571 | Vaccinium corymbosum | Ericaceae | KC343223 | KC343949 | KC344191 | KC343707 | KC343465 | Huang et al. (2015) | |
D. vawdreyi | BRIP 57887a | Psidium guajava | Sterculiaceae | KR936126 | KR936129 | KR936128 | - | - | Gomes et al. (2013) |
D. velutina | CGMCC 3.18286 = LC 4421 | Neolitsea sp., pathogen | Lauraceae | KX986790 | KX999182 | KX999223 | KX999261 | Gomes et al. (2013) | |
LC 4419 | Neolitsea sp., pathogen | Lauraceae | KX986789 | KX999181 | KX999222 | KX999260 | KX999286 | Crous et al. (2015) | |
LC 4641 | Callerya cinerea, pathogen | Fabaceae | KX986792 | KX999184 | KX999225 | KX999263 | KX999287 | This study | |
LC 4788 | Unknown host, pathogen | - | KX986785 | KX999177 | KX999218 | KX999256 | KX999285 | This study | |
LC 6708 | Camellia sinensis, pathogen | Theaceae | KX986787 | KX999179 | KX999220 | KX999258 | This study | ||
D. vexans | CBS 127.14 | Solanum melongena | Solanaceae | KC343229 | KC343955 | KC344197 | KC343713 | KC343471 | This study |
D. virgilia | CMW 40755 (ex-type) | Virgilia oroboides | Unknown | KP247573 | - | KP247582 | - | - | This study |
CMW 40748 | Virgilia oroboides | Unknown | KP247566 | - | KP247575 | - | - | Gomes et al. (2013) | |
D. woodii | CBS 558.93 | Lupinus sp. | Fabaceae | KC343244 | KC343970 | KC344212 | KC343728 | KC343486 | Gomes et al. (2013) |
D. woolworthii | CBS 148.27 | Ulmus americana | Ulmaceae | KC343245 | KC343971 | KC344213 | KC343729 | KC343487 | Gomes et al. (2013) |
D. xishuangbanica | CGMCC 3.18282= LC 6707 | Camellia sinensis, pathogen | Theaceae | KX986783 | KX999175 | KX999216 | KX999255 | - | This study |
LC 6744 | Camellia sinensis, pathogen | Theaceae | KX986784 | KX999176 | KX999217 | - | - | This study | |
D. yunnanensis | CGMCC 3.18289 = LC6168 | Coffea sp., endophytes | Rubiaceae | KX986796 | KX999188 | KX999228 | KX999267 | KX999290 | This study |
LC 8106 | Coffea sp., endophytes | Rubiaceae | KY491541 | KY491551 | KY491561 | - | KY491571 | This study | |
LC 8107 | Coffea sp., endophytes | Rubiaceae | KY491542 | KY491552 | KY491562 | - | KY491572 | This study | |
Diaporthe sp. | LC 6496 | Camellia sinensis, endophytes | Theaceae | KX986781 | KX999173 | KX999214 | KX999253 | KX999283 | This study |
LC 6512 | Camellia sinensis, endophyte | Theaceae | KX986782 | KX999174 | KX999215 | KX999254 | KX999284 | This study | |
LC 6232 | Theobroma cacao, endophyte | Sterculiaceae | KX986797 | KX999189 | KX999229 | KX999268 | KX999291 | This study | |
LC 8108 | Theobroma cacao, endophyte | Sterculiaceae | KY491543 | KY491553 | KY491563 | - | KY491573 | This study | |
LC 8109 | Theobroma cacao, endophyte | Sterculiaceae | KY491544 | KY491554 | KY491564 | - | KY491574 | This study | |
LC 6623 | Unknown host, pathogen | - | KX986795 | KX999187 | KX999227 | KX999266 | - | This study | |
LC 8114 | Unknown host, pathogen | - | KY491549 | KY491559 | KY491569 | - | - | This study | |
LC 8115 | Unknown host, pathogen | - | KY491550 | KY491560 | KY491570 | - | - | This study | |
LGMF 947 | Glycine max, seed | Fabaceae | KC343203 | KC343929 | KC344171 | KC343687 | KC343445 | Gomes et al. (2013) | |
CBS 119639 | Man, abscess | - | KC343202 | KC343928 | KC344170 | KC343687 | KC343444 | Gomes et al. (2013) | |
Diaporthe sp. 1 | CGMCC 3.18292 = LC 0771 | Alnus sp., pathogen | Betulaceae | KX986799 | KX999191 | KX999231 | KX999270 | KX999292 | This study |
Diaporthe sp. 2 | CGMCC 3.18291 = LC 6140 | Acer sp., endophyte | Aceraceae | KX986799 | KX999191 | KX999231 | KX999270 | KX999292 | This study |
LC8112 | Acer sp., endophyte | Aceraceae | KY491547 | KY491557 | KY491567 | - | KY491575 | This study | |
LC8113 | Acer sp., endophyte | Aceraceae | KY491548 | KY491558 | KY491568 | - | KY491576 | This study | |
Diaporthella corylina | CBS 121124 | Corylus sp., dying stems | Corylaceae | KC343004 | KC343730 | KC343972 | KC343488 | KC343246 | Gomes et al. (2013) |
P. conorum | CBS 587.79 | Penus pentaphylla | Pinaceae | KC343153 | KC343879 | KC344121 | KC343637 | KC343395 | Gomes et al. (2013) |
P. emicis | BRIP 45089a (ex-type) | Emex australis | Polygonaceae | JF957784 | JX275414 | JX275458 | - | JX197449 | Udayanga et al. (2012) |
P. fukushii | CBS 116953 | Pyrus pyrifolia | Roseceae | KC343147 | KC343873 | KC344115 | KC343631 | KC343389 | Gomes et al. (2013) |
BRIP 45089b | Emex australis | Polygonaceae | JQ619898 | JX275415 | JX275459 | - | JX197450 | Udayanga et al. (2012) | |